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Kumar, S. S., Arzi, A., Bareham, C., Gonzalez-Castillo, J., Fernandez, I. S., Tagliazucchi, E., Mediano, P. A. M., Bandettini, P. A., Bekinschtein, T. A. Brain network dynamics in transitions of consciousness reorganize according to task engagement.  BioRXiv, 2023.

Faskowitz, J., Moyer, D., Handwerker, D. A., Gonzalez-Castillo, J., Bandettini, P. A., Jbabdi, S., Betzel, R. Commentary on Pang et al. (2023) Nature . BioRXiv, 2023.

Gonzalez-Castillo, J., Fernandez, I. S., Lam, K. C., Handwerker, D. A., Pereira, F., Bandettini, P. A. Manifold learning for fMRI time-varying functional connectivity. 

Teves, J. B., Gonzalez-Castillo, J., Holness, M., Spurney, M., Bandettini, P. A., Handwerker, D. A. The art and science of using quality control to understand and improve fMRI data.  Front. Neurosci., 17: 1100544, 2023 (PMCID 37497043).

Kroenemer, S. I., Holness, M., Morgan, A. T., Teves, J. B., Gonzalez-Castillo, J., Handwerker, D. A., Bandettini, P. A. Visual imagery vividness correlates with afterimage brightness and sharpness.  BioRXiv, 2023.

Bandettini, P. A. Lost in transformation: fMRI power is diminished by unknown variability in methods and people.  Aperture Neuro, 2022.

Bandettini, P. A., Gonzalez-Castillo, J., Handwerker, D. A., Taylor, P., Chen, G., Thomas, A. The challenge of BWAS: Unknown unknowns in feature space and variance.  Med 3: 526-537, 2022. (PMID: 35963233).

Gonzalez-Castillo, J. Traveling and standing waves in the brain.  Nature Neuroscience 25: 980-981, 2022 (PMCID 10170397).

Gonzalez-Castillo, J., Fernandez, I. S., Handwerker, D. A., & Bandettini, P. A. Ultra-slow fMRI fluctuations in the fourth ventricle as a marker of drowsiness.  NeuroImage, 259: 119424, 2022 (PMCID PMC9377091).Yu, Y., Huber, L., Yang, J., Fukunaga, M., Chai, Y., Dangraw, D. C., Chen, G., Handwerker, D. A., Molfese, P. J., Ejima, Y., Sadato, N., Wu, J., Bandettini, P. A. Layer-specific activation in human primary somatosensory cortex during tactile temporal prediction error processing . NeuroImage 248: 118867, 2022 (PMID: 34974114)

Bandettini, P. A., Huber, L., Finn, E. S. Challenges and opportunities of mesoscopic brain mapping with fMRI.  Current Opinion on Behavioral Sciences, 40: 189-200, 2021.

Yang, J., Molfese, P. J., Yu, Y., Handwerker, D. A., Chen, G., Taylor, P. A., Ejima, Y., Wu, J., Bandettini, P. A. Different activation signatures in the primary sensorimotor and higher-level regions for haptic three-dimensional curved surface exploration.  NeuroImage 231: 117754, 2021 (PMID 33454415).

Gonzalez-Castillo, J., Kam, J. W. Y, Hoy, C. W., Bandettini, P. A.How to Interpret Resting-State fMRI: Ask Your Participants.  Journal of Neuroscience 41: 1130-1141, 2021 (PMID 33568446).

Huber, L., Finn, E. S., Chai, Y., Goebel, R., Stirnberg, R., Stöcker, T., Marrett, S., Uludag, K., Kim, S., Han, S., Bandettini, P. A., Poser, B. A. Layer-dependent functional connectivity methods.  Progress in Neurobiology 207: 101835, 2021 (PMID 32512115 ).

Yang, J., Huber, L., Yu, Y., Bandettini, P. A. Linking cortical circuit models to human cognition with laminar fMRI.  Neuroscience and Biobehavioral Reviews 128: 467-478, 2021 (PMID 34245758 ).

Chai, Y., Li, L., Wang, Y., Huber, L., Poser, B. A., Duyn, J., Bandettini, P. A. Magnetization transfer weighted EPI facilitates cortical depth determination in native fMRI space.  NeuroImage 242: 118455, 2021 (PMID 34364993).

Chai, Y., Liu, T. T., Marrett, S., Li, L., Kohandi, A., Handwerker, D. A., Alink, A., Muckli, L., Bandettini, P. A. Topographical and laminar distribution of audiovisual processing within human planum temporale.  Progress in Neurobiology 205: 102121, 2021 (PMID 34273456).

Finn, E. S., Glerean, E., Kojandi, A. Y., Nielson, D., Molfese, P. J., Handwerker, D. A., Bandettini, P. A. Idiosynchrony: From shared responses to individual differences during naturalistic neuroimaging.  NeuroImage 215: 116828, 2020 (PMID 32276065)

Huber, L., Finn, E. S., Handwerker, D. A., Bönstrup, M., Glen, D. R., Kashyap, S., Ivanov, D., Petridou, N., Marrett, S., Goense, J., Poser, B. A., Bandettini, P. A. Sub-millimeter fMRI reveals multiple topographical digit representations that form action maps in human motor cortex.  NeuroImage 208: 116463, 2020 (PMID 31862526).

Handwerker, D. A., Ianni, G., Gutierrez, B., Roopchansingh, V., Gonzalez-Castillo, J., Chen, G., Bandettini, P. A., Ungerleider, L. G., Pitcher, D. Theta-burst TMS to posterior superior temporal sulcus decreases resting-state fMRI connectivity across the face processing network.  Network Neuroscience 4: 746-760, 2020 (PMID 32885124).

Gonzalez-Castillo, J., Ramot, M., Momenan, R. Towards Expanded Utility of Real Time fMRI Neurofeedback in Clinical Applications. Front . Hum. Neurosci., 14: 606868, 2020 (PMID: 33281590). 

Gonzalez-Castillo, J., Bandettini, P. A. Task-based dynamic functional connectivity: Recent findings and open questions.  NeuroImage 180: 526-533, 2018 (PMCID 5797523).

Huber, L., Handwerker, D. A., Jangraw, D. C., Chen, G., Hall, A., Stüber, C., Gonzalez-Castillo, J., Ivanov, D., Marrett, S., Guidi, M., Goense, J., Poser, B. A., Bandettini, P. A. High-resolution CBV-fMRI allows mapping of laminar activity and connectivity of cortical input and output in human M1.  Neuron 96: 1257-1263, 2017 (PMCID 5739950).

Kundu, P., Voon, V., Balchandani, P., Lombardo, M.V., Poser, B.A., Bandettini, P.A. Multi-echo fMRI: a review of applications in fMRI denoising and analysis of BOLD signals . Neuroimage 154: 59-80, 2017 (PMID: 28363836)

Gonzalez-Castillo, J., Hoy, C. W., Handwerker, D. A., Robinson, M. E., Buchanan, L. C., Saad, Z. S., Bandettini, P. A. Tracking ongoing cognition in individuals using brief, whole-brain functional connectivity patterns . PNAS, 112: 8762-8767, 2015 (PMCID: 4507216).

Gonzalez-Castillo, J., Hoy, C. W., Handwerker, D. A., Roopchansingh, V, Inati, S. J., Saad, Z. S., Cox, R. W., Bandettini, P. A. Task dependence, tissue specificity and spatial distribution of widespread activations in large single-subject functional MRI datasets at 7T.  Cerebral Cortex, doi:10.1093/cercor/bhu148, 2014 (PMID: 25405938).

Kundu, P., Brenowitz, N. D., Voon, V., Worbe, Y., Vertes, P. E., Inati, S. J., Saad, Z. S., Bandettini, P. A., Bullmore, E. T. Integrated strategy for improving functional connectivity mapping using multiecho fMRI.   PNAS, 110:16187-16192, 2013 (PMCID: PMC3791700).

Murphy, K., Birn, R. M., Bandettini, P. A. Resting state fMRI confounds and cleanup.  NeuroImage, 80: 349-359, 2013 (PMCID: PMC3720818).

Kundu, P., Inati, S. J., Evans, J. W., Luh, W. M., Bandettini, P. A. Whole-brain, time-locked activation with simple tasks revealed using massive averaging and model-free analysis.  Proc. Nat'l. Acad. Sci. USA, 109(14): 5487-5492, 2012 (PMCID 3325687).

Kundu, P., Inati, S. J., Evans, J. W., Luh, W. M., Bandettini, P. A. Differentiating BOLD and non-BOLD signals in fMRI time series using multi-echo EPI.  NeuroImage, 60: 1759-1770, 2012 (PMCID 3350785).

Handwerker, D. A., Roopchansingh, V., Gonzalez-Castillo, J., Bandettini, P. A. Periodic changes in fMRI connectivity.  NeuroImage, 63: 1712-1719, 2012 (PMCID 4180175).

Bandettini, P. A.Twenty years of functional MRI: the science and the stories.  Neuroimage 62: 575-588, 2012 (PMID: 22542637).

Handwerker, D. A., Gonzalez-Castillo, J., D’Esposito, M., Bandettini, P. A. The continuing challenge of understanding and modeling hemodynamic variation in fMRI.  NeuroImage 62: 1017-1023, 2012 (PMCID 4180210).

Murphy, K., Birn, R. M., Handwerker, D. A., Jones, T. B., Bandettini, P. A. The impact of global signal regression on resting state correlations: Are anti-correlated networks introduced?  NeuroImage, 44: 893-905, 2009. (PMCID 2750906).

Bandettini, P. A.What’s new in neuroimaging methods?  Annals of the New York Academy of Sciences, 1156: 260-293, 2009 (PMCID 2716071).

Birn, R. M., Smith, M. A., Jones, T. B. Bandettini, P. A. The respiration response function: the temporal dynamics of fMRI signal fluctuations related to changes in respiration.  NeuroImage, 40:644-654, 2008 (PMCID 2533266).

Kriegeskorte, N., Mur, M., Ruff, D. A., Kiani, R., Bodurka, J., Esteky, H., Tanaka, K., Bandettini, P.A. Matching categorical object representations in inferotemporal cortex of man and monkey.   Neuron, 60: 1-16, 2008 (PMCID 19109916).

Kriegeskorte, N., Mur, M., Bandettini, P. A. Representational similarity analysis – connecting the branches of systems neuroscience.  Frontiers in Systems Neuroscience, 2, 2008 (PMCID 2605405).

Birn, R. M., Murphy, K., Bandettini, P. A. The effect of respiration variations on independent component analysis results of resting state functional connectivity . Human Brain Mapping, 29: 740-750, 2008 (PMCID 2715870).

Bodurka, J., Ye, F., Petridou, N., Murphy, K., Bandettini P. A. Mapping the MRI voxel volume in which thermal noise matches physiological noise – implications for fMRI.  NeuroImage, 34: 542-549, 2007 (PMCID 1815476).

Murphy, K., Bodurka, J., Bandettini, P. A. How long to scan? The relationship between fMRI temporal signal to noise ratio and necessary scan duration.  NeuroImage, 34: 565-574, 2007. (PMCID 2223273).

Kriegeskorte N., Bandettini P. A. Analyzing for information, not activation, to exploit high-resolution fMRI.  Neuroimage, 38: 649–662, 2007 (PMCID 2099257).

Kriegeskorte N., Goebel R., Bandettini P. A. Information-based functional brain mapping . Proceedings of the National Academy of Sciences of the United States of America. 103(10): 3863–3868, 2006 (PMCID 16537458).

Petridou, N., Plenz, D., Silva, A. C., Bodurak, J., Loew, M., Bandettini P. A. Direct Magnetic Resonance detection of neuronal electrical activity,  Proc. Nat'l. Acad. Sci. USA. 103, 16015-16020, 2006 (PMCID 1635119).

Birn, R.M, Diamond, J. B., Smith, M. A., Bandettini, P. A. Separating respiratory-variation-related fluctuations from neuronal-activity-related fluctuations in fMRI.  Neuroimage 31: 1536-1548, 2006 (PMID: 16632379).

Knight, D. C., Nguyen, H. T., Bandettini, P. A. The role of the human amygdala in the production of conditioned fear responses.  NeuroImage 26: 1193-1200, 2005 (PMID: 15961053).

Bellgowan, P. S. F., Saad, Z. S., Bandettini P. A. Understanding neural system dynamics through task modulation and measurement of functional MRI amplitude, latency, and width.  Proc. Nat'l. Acad. Sci. USA100: 1415-1419, 2003 (PMCID 12552093).

Bodurka, J., Bandettini, P. A. Toward direct mapping of neuronal activity: MRI detection of ultraweak, transient magnetic field changes.  Magn. Reson. Med. 47: 1052-1058, 2002 (PMID: 12111950).

Birn, R.M., Saad, Z.S., Bandettini, P. A. Spatial heterogeneity of the nonlinear dynamics in the fMRI BOLD response.  NeuroImage 14, 817-826, 2001 (PMID: 11554800).

Bandettini P. A., Jesmanowicz, A., Wong, E. C., Hyde, J. S. Processing strategies for time-course data sets in functional MRI of the human brain.  Magn. Reson. Med. 30: 161-173, 1993 (PMCID 8366797).

Bandettini P. A., Wong, E. C., Tikofsky, R. S., Hinks, R. S., Hyde, J. S. Time course EPI of human brain function during task activation.  Magn. Reson. Med. 25: 390-397, 1992 (PMCID 1614324).